Research
How do conifers adapt under climate change?
Conifers are ecologically dominant and economically important, but are globally succumbing to drought, disease, early-budding and other challenges. One of the oldest lineages on earth, conifers have the genetic diversity to adapt to a broad range of environments. However, long generation times combined with the greatly increased rate of climate change globally challenges trees’ ability to adapt, resulting in weakened individuals and eventually stand loss.
We use quantitative, computational and population genetic approaches in forests across Europe to understand climate adaptation in conifers. To understand how trees adapt to their environment – and how they might perform under changing climate – we first need to understand how much of growth is due to genetics and how much can be attributed to the experienced environment. By focusing on annual growth measured from tree-rings, which form when growth stops during the winter months in temperate regions, we can observe individuals growing across their lifespan. For the years with available environmental data from historical records, weather stations or satellites, we can model individual environmental responses, which are often highly heritable.
Once we have estimates of adaptation for individuals, we can parse the genome to understand the genetics underlying adaptation, and how this may differ across species and populations. We can also generate predictive models to estimate how well adapted an individual might be to an environment that it hasn’t experienced. Because we are working with tree-rings, we are not limited to controlled populations. This means that we can evaluate any tree’s performance in any modeled environment. As environments shift under climate change, this approach provides a powerful tool to select parents for healthy, resilient forests.
Our work is funded by generous support from:
Team
- Ph.D., Plant Genetics
- M.A., Anthropology with a focus in Archaeology
- B.S., Biology and Anthropology
- Data-Driven Life Science Fellow, Knut and Alice Wallenburg Foundation/SciLife Labs, 2023
- Austrian Science Fund (FWF) Special Research Program (SFB) F79100- B, sub-project P09, 2023
- European Research Council Starting Grant, Horizon ERC 2022 #101078208, 2022
- History Colorado State Historical Fund Grant #2019-M2-001, 2018
- National Science Foundation Postdoctoral Research Fellowship in Biology - Interdisciplinary Research Using Biological Collections #1612158, 2016.
- Environmental Archaeology Internship (under Dr. Karen Adams), competitive, paid internship at Crow Canyon Archaeological Center, 2008.
- Carleton T. Hodge Award for Academic Excellence in Anthropology, Northern Arizona University, 2007.
- Clements Award, Scholarship for participation in the Fort Burgwin Archaeological Fieldschool, 2005.
- Co-Instructor, Genomic Approaches, University of Vienna, 2021-2023
- Co-Instructor, Numbers in Biology, VBC PhD Program Introductory Course, 2019-2023
- Co-Instructor, Genomic Prediction, PopGen Vienna DK Introductory Course, 2019-2023
- Co-Instructor, Molecular Population Genetics, University of Vienna, 2019-2023
- Co-Instructor, Genotype to Phenotype, MPI - Tubingen Ph.D Introductory Course, 2016-2017
- Teaching Assistant, PLBR 2010-Plants, Genes and Global Food Production, Cornell University, 2014
- Co-Instructor, Marker Assisted Selection Workshop, Debre Zeit, Ethiopia, 2013
- Teaching Assistant, ANT 102-Exploring Cultures (online), Northern Arizona University, 2007
- Teaching Assistant, ANT 305-Peoples of the World (online), Northern Arizona University, 2007
- Assistant Professor and Data Driven Life Sciences Fellow, Umea Plant Sciences Center, Swedish University of Agricultural Sciences - Department of Forest Genetics and Plant Physiology
- Group Leader, Gregor Mendel Institute/Max F. Perutz Laboratory, Vienna, Austria, 2019-2023
- NSF Postdoctoral Researcher, Research Group for Ancient Genomics and Evolution, Max-Planck Institute for Developmental Biology, Tubingen DE, 2016-2018
- Graduate Student Researcher, Buckler Laboratory, Cornell University, 2011-2016
- Volunteer, Chandler Laboratory, University of Arizona, 2010-2011
- Archaeological Supervisor, Cultural Resource Management, Southwest US, 2008-2010
- Crow Canyon Environmental Archaeology Intern, Dr. Karen Adams, 2008
- Archaeologist (GIS Specialist), Peaks Ranger District, Coconino National Forest, 2007-2008
- Archaeologist, Cultural Resource Management, Southwest US, 2005-2006
- Climate adaptation in natural forest trees. Plenary talk, 6th biennal conference of the Nordic Society OIKOS, Lund, Sweden, March 15th, 2023.
- Extracting heritable variation from tree-rings allows for precision breeding in a changing climate. Invited talk, TRACE Conference, Coimbra, Portugal, May 10, 2023.
- Subsistence crops and animals as a proxy for human cultural practice. Symposium organizer, 88th Annual Meeting of the Society for American Archaeology, Portland, Oregon, USA, March 30, 2023.
- Adaptation to climate estimated from natural forest trees, Invited talk, Session chair. Probabilistic Modeling in Genomics, Cold Spring Harbor Laboratories, New York, USA, March 10, 2023.
- Detecting climate adaptation in natural forest trees. Invited talk, Scientific Afternoon, Federal Research Center for Forests (BFW), Vienna, Austria, October 11, 2022.
- Tree-ring genomics for understanding the genetics of environmental adaptation. Keynote talk, SPPS 75th Annual Meeting, Longyearbyen, Svalbard, Norway, August 31, 2022.
- Detecting climate adaptation in natural forest trees. Invited talk, Agrigenoomics Seminar Series, BOKU, Tulln, Austria, April 21, 2022.
- Detecting climate adaptation in natural forest trees. Invited talk, CiBreed Seminar Series, Georg-August-University, Gottingen, Germany, May 30, 2021.
- Origins of temperate adaptation in maize with implications for global germplasm. Invited talk, EvoLunch, ISTA, Austria, March 23, 2019.
- Tree-ring genomics. Invited talk, Science2Go, VBC, Vienna, Austria.
- Origins of temperate adaptation in maize. Invited talk, Pop Gen Vienna, VetMed, Austria, March 12, 2019.
- Origins of temperate adaptation in maize with implications for global germplasm. Invited talk, Gordon Conference for Quantitative Genetics, Lucca, Italy, February 11, 2019.
- Origins of temperate adaptation in maize with implications for global germplasm. Invited talk, Technische Universitaet Muenchen, Freising, Germany, February 7, 2019.
- Origins of temperate adaptation in maize in the American Southwest. Invited talk, Crow Canyon Archaeological Center, November 13, 2018.
- Origins of temperate adaptation in maize with implications for global germplasm. Invited talk, 60th Annual Maize Genetic Conference - St. Malo, France, March 23, 2018.
- Origins of temperate adaptation in maize. Invited talk, Plant and Animal Genome XXVI - San Diego, CA, January 13th, 2018.
- Origins of temperate adaptation in maize with implications for modern breeding. Invited talk, Quantitative Genetics and Evolution - Le Moulon, INRA, France, September 15th, 2017.
- Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America, Invited talk, Regional Plant Science Meeting, Max Planck Institute for Developmental Biology, April 18th, 2017.
- Plant Domestication: Morphology, Genetics and Social Context. Invited forum, 79th Annual Meeting of the Society for American Archaeology. Austin, TX., April 25th, 2014.
- New imputation strategies optimized for crop plants: FILLIN and FSFHap. Invited talk, Plant and Animal Genome, San Diego, CA, January 11th, 2014.
- Understanding temperate adaptation in North American maize. Invited talk, Native Seeds/SEARCH, Tucson, AZ., August 23, 2013.
- Assistant Editor, PLOS Genetics, 2019-2022
- Executive committee member of Synapsis (Cornell graduate student association), 2011-2015
- Organizing Committee, DuPont Pioneer-Cornell University Symposium, 2012-2015
CV K. Swarts
EDUCATION
Thesis: Origins of Temperate Adaptation in Maize
Advisor: Edward S. Buckler
Thesis: High Elevation Wood and Social Meaning: A Paleoethnobotanical Investigation at
Honey Bee Village, a Hohokam Ballcourt Settlement in the Northern Tucson Basin
Advisor: George Gumerman
Thesis: Resource Availability and Consumer Choice by Late Archaic Foragers in the
Taos District, NM: Implications for Mobility and Agricultural Potential
Advisor: Richard Ford